Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20011952

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20011952
Fusion NameHPV-LINC01965 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameSCC-1
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq12.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start104584700
Hg19 End104584701
Hg38 Start103968242
Hg38 End103968243
Junction Sequence-
Target Gene
Target GeneLINC01965
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV58
Virus Genome AccessionD90400.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 58 complete genome
Virus Genome Length7824 bp
Virus Breakpoint17145
Virus Breakpoint27279
Virus Gene NameHpV58gp8_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404107