| Basic Information ▶ | |
| VISDB ID | TVIS20012106 |
|---|---|
| Fusion Name | HPV-LIMS1 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | High-throughput Viral Integration Detection method |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | SCC-1 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical carcinoma |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 33023834 |
| Journal | Journal of Genetics and genomics |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr2 |
| Cytogenetic Band | q12.3 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | 109161235 |
| Hg19 End | 109161236 |
| Hg38 Start | 108544779 |
| Hg38 End | 108544780 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | LIMS1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HpV58 |
| Virus Genome Accession | D90400.1 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 58 complete genome |
| Virus Genome Length | 7824 bp |
| Virus Breakpoint1 | 2128 |
| Virus Breakpoint2 | 2262 |
| Virus Gene Name | HpV58gp3_E1 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 5404261 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D