Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20012190

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20012190
Fusion NameHPV-chr15:44908438 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameSCC-2
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr15
Cytogenetic Bandq21.1
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start45200636
Hg19 End45200637
Hg38 Start44908438
Hg38 End44908439
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000259742
Distance6364
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionAF534061.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint16730
Virus Breakpoint26864
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404345