Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20012208

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20012208
Fusion NameHPV-ENSG00000254844 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameSCC-2
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq23.3
Human Strand+
Human Integration Location Typeintronic
Hg19 Start117691528
Hg19 End117691529
Hg38 Start117820813
Hg38 End117820814
Junction Sequence-
Target Gene
Target GeneENSG00000254844, FXYD2, FXYD6-FXYD2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionAF534061.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint15855
Virus Breakpoint25989
Virus Gene NameHpV16gp8_L1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404363