Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20012216

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20012216
Fusion NameHPV-DSCAM integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameSCC-2
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr21
Cytogenetic Bandq22.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start41520733
Hg19 End41520734
Hg38 Start40148806
Hg38 End40148807
Junction Sequence-
Target Gene
Target GeneDSCAM
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionAF534061.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint17605
Virus Breakpoint27739
Virus Gene NameHpV16gp8_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404371