Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20012381

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20012381
Fusion NameHPV-LINC02233 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameSCC-3
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq32.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start160617132
Hg19 End160617133
Hg38 Start159695980
Hg38 End159695981
Junction Sequence-
Target Gene
Target GeneLINC02233
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionAF125673.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate 16W12E, complete genome
Virus Genome Length7904 bp
Virus Breakpoint17184
Virus Breakpoint27318
Virus Gene NameHpV16gp8_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404537