Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20012543

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20012543
Fusion NameHPV-GARS1 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameSCC-3
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandp14.3
Human Strand+
Human Integration Location Typeintronic
Hg19 Start30656411
Hg19 End30656412
Hg38 Start30616795
Hg38 End30616796
Junction Sequence-
Target Gene
Target GeneGARS1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionAF125673.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 isolate 16W12E, complete genome
Virus Genome Length7904 bp
Virus Breakpoint12228
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404699