Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20012624

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20012624
Fusion NameHPV-chr20:12748255 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameChronic cervicitis
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr20
Cytogenetic Bandp12.1
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start12728902
Hg19 End12728903
Hg38 Start12748255
Hg38 End12748256
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000305946
Distance5765
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV58
Virus Genome AccessionD90400.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 58 complete genome
Virus Genome Length7824 bp
Virus Breakpoint14723
Virus Breakpoint24857
Virus Gene NameHpV58gp7_L2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404781