Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20012644

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20012644
Fusion NameHPV-LINC00922 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameChronic cervicitis
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr16
Cytogenetic Bandq21
Human Strand+
Human Integration Location Typeintronic
Hg19 Start65547537
Hg19 End65547538
Hg38 Start65513634
Hg38 End65513635
Junction Sequence-
Target Gene
Target GeneLINC00922
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV58
Virus Genome AccessionD90400.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 58 complete genome
Virus Genome Length7824 bp
Virus Breakpoint13983
Virus Breakpoint24117
Virus Gene NameHpV58gp6_E5
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404801