Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20012715

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20012715
Fusion NameHPV-chr4:130593802 integration
ValidatedNo
Curated WayViMIC
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample NameChronic cervicitis
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical carcinoma
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33023834
JournalJournal of Genetics and genomics
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq28.3
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start131514957
Hg19 End131514958
Hg38 Start130593802
Hg38 End130593803
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV52
Virus Genome AccessionHQ537743.1
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 52 isolate IN141070, complete genome
Virus Genome Length7960 bp
Virus Breakpoint13273
Virus Breakpoint23407
Virus Gene NameHpV52gp4_E2;HpV52gp5_E4
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5404872