Basic Information ▼ | |
VISDB ID | TVIS20012715 |
---|---|
Fusion Name | HPV-chr4:130593802 integration |
Validated | No |
Curated Way | ViMIC |
Method | High-throughput Viral Integration Detection method |
Wet Assay | Yes |
Sample ID | - |
Sample Name | Chronic cervicitis |
Sample Type | Tumor |
Age | - |
Gender | - |
Disease Information ▼ | |
Disease Name | Cervical carcinoma |
Disease Abbreviation | CC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 33023834 |
Journal | Journal of Genetics and genomics |
Published Year | 2020 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr4 |
Cytogenetic Band | q28.3 |
Human Strand | + |
Human Integration Location Type | intergenic |
Hg19 Start | 131514957 |
Hg19 End | 131514958 |
Hg38 Start | 130593802 |
Hg38 End | 130593803 |
Junction Sequence | - |
Target Gene ▼ | |
Target Gene | - |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Human Papillomavirus |
Virus Subtype Name | HpV52 |
Virus Genome Accession | HQ537743.1 |
TaxonomyID | 10566 |
Virus Abbreviation | HPV |
Virus Genome | Human papillomavirus type 52 isolate IN141070, complete genome |
Virus Genome Length | 7960 bp |
Virus Breakpoint1 | 3273 |
Virus Breakpoint2 | 3407 |
Virus Gene Name | HpV52gp4_E2;HpV52gp5_E4 |
Virus Region Type | - |
Integrated Virus Sequence | - |
ViMIC ID | 5404872 |