| Basic Information ▶ | |
| VISDB ID | TVIS20012884 |
|---|---|
| Fusion Name | HPV-SMARCC1 integration |
| Validated | No |
| Curated Way | ViMIC |
| Method | Whole-exome sequencing |
| Wet Assay | No |
| Sample ID | - |
| Sample Name | Patient 7 |
| Sample Type | Tumor |
| Age | 66 |
| Gender | Female |
| Disease Information ▶ | |
| Disease Name | Anal squamous cell carcinomas |
| Disease Abbreviation | ASCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 33883185 |
| Journal | Molecular Cancer Research |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr3 |
| Cytogenetic Band | p21.31 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 47661389 |
| Hg38 End | 47661390 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | SMARCC1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV-16 |
| Virus Genome Accession | NC_001526.4 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 16, complete genome |
| Virus Genome Length | 7906 bp |
| Virus Breakpoint1 | 467 |
| Virus Breakpoint2 | - |
| Virus Gene Name | E1 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | 5500033 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D