Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20012916

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20012916
Fusion NameHPV-ASAH1 integration
ValidatedNo
Curated WayViMIC
MethodWhole-exome sequencing
Wet AssayNo
Sample ID-
Sample NamePatient 10
Sample TypeTumor
Age49
GenderFemale
Disease Information
Disease NameAnal squamous cell carcinomas
Disease AbbreviationASCC
CancerYes
Literature
PubMed ID33883185
JournalMolecular Cancer Research
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr8
Cytogenetic Bandp22
Human Strand
Human Integration Location Typeexonic
Hg19 Start-
Hg19 End-
Hg38 Start18061858
Hg38 End18061859
Junction Sequence-
Target Gene
Target GeneASAH1
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV-16
Virus Genome AccessionNC_001526.4
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16, complete genome
Virus Genome Length7906 bp
Virus Breakpoint12467
Virus Breakpoint2-
Virus Gene NameE2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID5500065