| Basic Information ▶ | |
| VISDB ID | TVIS20012951 |
|---|---|
| Fusion Name | HPV-RNY1P8 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Capture-based next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | SiHa (HPV16) |
| Sample Type | Cell line |
| Age | - |
| Gender | Female |
| Disease Information ▶ | |
| Disease Name | Cervical Cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 30963559 |
| Journal | International Journal of Cancer |
| Published Year | 2020 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr13 |
| Cytogenetic Band | |
| Human Strand | |
| Human Integration Location Type | |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 73,214,729 |
| Hg38 End | 73,513,425 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | RNY1P8, ENSG00000298494, ENSG00000301480, MARK2P12, ENSG00000279754, ENSG00000303248, LINC00393 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV73B |
| Virus Genome Accession | - |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | 3,132 |
| Virus Breakpoint2 | 3,384 |
| Virus Gene Name | E2/E4 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D