Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20013187

Genomic Region Visualization (IGV)

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Basic Information
VISDB IDTVIS20013187
Fusion NameHPV-WDPCP integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID18O000404_OC053
Sample Name-
Sample TypeTumor
Age-
GenderFemale
Disease Information
Disease NameCervical cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID31258786
JournalJournal of Cancer
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandp15
Human Strand
Human Integration Location Typeintronic
Hg19 Start64030360
Hg19 End64030360
Hg38 Start63803226
Hg38 End63803226
Junction Sequence-
Target Gene
Target GeneWDPCP, ENSG00000289943
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype Name-
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-