Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20013318

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20013318
Fusion NameHPV-ENSG00000249894 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample IDCES2
Sample NameCES2-R/M
Sample TypeTumor
Age44
GenderFemale
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33017516
JournalCancer Medicine
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandq13.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start67182356
Hg19 End67182356
Hg38 Start67886528
Hg38 End67886528
Junction Sequence-
Target Gene
Target GeneENSG00000249894, ENSG00000250421
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome AccessionAY262282
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 18 complete sequence
Virus Genome Length7857 bp
Virus Breakpoint17519
Virus Breakpoint2-
Virus Gene NameHpV18gp8_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-