Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20013337

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20013337
Fusion NameHPV-chr13:73365018 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample IDCES2
Sample NameCES2-R/M
Sample TypeTumor
Age44
GenderFemale
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33017516
JournalCancer Medicine
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr13
Cytogenetic Bandq22.1
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start73939155
Hg19 End73939155
Hg38 Start73365018
Hg38 End73365018
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000279754
Distance1017
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome AccessionAY262282
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 18 complete sequence
Virus Genome Length7857 bp
Virus Breakpoint11266
Virus Breakpoint2-
Virus Gene NameHpV18gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-