Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20013888

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20013888
Fusion NameHPV-chr11:107218834 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample IDCES3
Sample NameCES3-R/M
Sample TypeTumor
Age58
GenderFemale
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33017516
JournalCancer Medicine
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq22.3
Human Strand+
Human Integration Location Typeintergenic
Hg19 Start107089560
Hg19 End107089560
Hg38 Start107218834
Hg38 End107218834
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint1460
Virus Breakpoint2-
Virus Gene NameHpV16gp1_E6
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-