Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20014333

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20014333
Fusion NameHPV-ENSG00000249236 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample IDCES3
Sample NameCES3-R/M
Sample TypeTumor
Age58
GenderFemale
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33017516
JournalCancer Medicine
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandq11.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start55330039
Hg19 End55330039
Hg38 Start56034212
Hg38 End56034212
Junction Sequence-
Target Gene
Target GeneENSG00000249236
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13913
Virus Breakpoint2-
Virus Gene NameHpV16gp6_E5
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-