Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20014338

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20014338
Fusion NameHPV-PLCXD3 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample IDCES3
Sample NameCES3-R/M
Sample TypeTumor
Age58
GenderFemale
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33017516
JournalCancer Medicine
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr5
Cytogenetic Bandp13.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start41348823
Hg19 End41348823
Hg38 Start41348721
Hg38 End41348721
Junction Sequence-
Target Gene
Target GenePLCXD3
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint17205
Virus Breakpoint2-
Virus Gene NameHpV16gp8_L1//downstream
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-