Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20014484

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20014484
Fusion NameHPV-chr17:81838765 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample IDCES4
Sample NameCES4-R/M
Sample TypeTumor
Age34
GenderFemale
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33017516
JournalCancer Medicine
Published Year2020
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq25.3
Human Strand-
Human Integration Location Typeintergenic
Hg19 Start79796641
Hg19 End79796641
Hg38 Start81838765
Hg38 End81838765
Junction Sequence-
Target Gene
Target Gene-
Nearby GenePPP1R27
Distance3715
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint14419
Virus Breakpoint2-
Virus Gene NameHpV16gp7_L2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-