Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20014524

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20014524
Fusion NameHPV-3:189925788 integration
ValidatedNo
Curated WayCurated
MethodCapture-based next-generation sequencing
Wet AssayYes
Sample ID72
Sample NameBC72
Sample TypeTumor
Age71
GenderMale
Disease Information
Disease NameBladder Cancer
Disease AbbreviationBC
CancerYes
Literature
PubMed ID33205207
JournalThe Journal of Infectious Diseases
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosome3
Cytogenetic Bandq28
Human Strand
Human Integration Location Typeintergenic
Hg19 Start-
Hg19 End-
Hg38 Start189925788
Hg38 End189925788
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNS
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint13425
Virus Breakpoint2-
Virus Gene NameE2, E4
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-