Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20014651

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20014651
Fusion NameHPV-INKILN integration
ValidatedYes
Curated WayCurated
MethodRNA sequencing, followed by integration sites detection using ChimeraScan, deFuse and SOAPFuse
Wet AssayYes
Sample IDRC49
Sample NameZJU
Sample TypeTumor
Age31
GenderFemale
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33785400
JournalGenomics
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq13.3
Human Strand
Human Integration Location Typeintronic
Hg19 Start74572294
Hg19 End74572294
Hg38 Start73706577
Hg38 End73706577
Junction SequenceATGCACCAAAAGAGAACTGCAATGTTTCAGGACCCACAGGAGCGACCCAGAAAGTTACCACAGTTATGCACAGAGCTGCAAACAACTATACATGATATAATATTAGAATGTGTGTACTGCAAGCAACAGTTACTGCGACGTG|AGTTGCTTGTTGCATGCCTTCTAAACAGCCTACCCTGCCAAGTGCCATGATTACTGTGACCACATCTTCAGAACCAGAAAACAGGATACCTGGCCCTAAGCATGCACTCATGGAGCAGAAGAGTTTTAAATCTGGAATGCCACAGAAGACAGAAGATAACATGCTTACTACACTTGTAAAGCAACATGCAGCCAGCCATTTCCAGTGCAAATTATCTCATTGCATAGTGTGACAACTAAAGGTCATAACCATAATACAAATCGTGTTTTTCTT
Target Gene
Target GeneINKILN
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1224
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-