| Basic Information ▶ | |
| VISDB ID | TVIS20014707 |
|---|---|
| Fusion Name | HPV-PTPN13 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | RNA sequencing, followed by integration sites detection using ChimeraScan, deFuse and SOAPFuse |
| Wet Assay | Yes |
| Sample ID | RC55 |
| Sample Name | ZJU |
| Sample Type | Tumor |
| Age | 52 |
| Gender | Female |
| Disease Information ▶ | |
| Disease Name | Cervical Cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 33785400 |
| Journal | Genomics |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr4 |
| Cytogenetic Band | q21.3 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 87622770 |
| Hg19 End | 87622770 |
| Hg38 Start | 86701617 |
| Hg38 End | 86701617 |
| Junction Sequence | TGACCTTCTATGTCACGAGCAATTAAGCGACTCAGAGGAAGAAAACGATGAAATAGATGGAGTTAATCATCAACATTTACCAGCCCGACGAGCCGAACCACAACGTCACACAATGTTGTGTATGTGTTGTAAGTGTGAAGCCAGAATTGAGCTAGTAGTAGAAAGCTCAGCAGACGACCTTCGAGCATTCCAGCAGCTGTTTCTGAACACCCTGTCCTTTGTGTGTCCGTGGTGTGCATCCCAGCAGTAAGCAACAATGGCTGATCCAGA|AGGAGTAGTTGAAGTCCGCACTGTTACTGCCTCAGGGTGACAACGACGATATGTGGCAGTCTCTCCTGAAGAGAAGTCTCTGTCAGCTGTACAAAGCAAGTCCATGGATGAAGCCCAGATCTTCTTCTTAGAAAGCACATCAATGCCAGGGATGGGTTTTTTTTCTGGGCCACTAGTTTTGAACTGGTAAGGGGAGAATGTATTTTCAGAATCTTCACGTCCAGAATTATCTGATAAAATGTCCTTGAAATAATTCTCATCTTGTGTATCT |
| Target Gene ▶ | |
| Target Gene | PTPN13 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV18 |
| Virus Genome Accession | - |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | 927 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D