Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20014715

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20014715
Fusion NameHPV-IL15 integration
ValidatedNo
Curated WayCurated
MethodRNA sequencing, followed by integration sites detection using ChimeraScan, deFuse and SOAPFuse
Wet AssayYes
Sample IDRC89
Sample NameZJU
Sample TypeTumor
Age37
GenderFemale
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33785400
JournalGenomics
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq31.21
Human Strand
Human Integration Location Typeintronic
Hg19 Start142649383
Hg19 End142649383
Hg38 Start141728230
Hg38 End141728230
Junction Sequence-
Target Gene
Target GeneIL15
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint13226
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-