Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20014905

Genomic Region Visualization (IGV)

Basic Information ▶
VISDB IDTVIS20014905
Fusion NameHPV-VMP1 integration
ValidatedNo
Curated WayCurated
MethodRNA sequencing, followed by integration sites detection using ChimeraScan, deFuse and SOAPFuse
Wet AssayYes
Sample IDRC92
Sample NameZJU
Sample TypeTumor
Age40
GenderFemale
Disease Information ▶
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature ▶
PubMed ID33785400
JournalGenomics
Published Year2021
Human Genome ▶
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq23.1
Human Strand
Human Integration Location Typeexonic
Hg19 Start57842332
Hg19 End57842332
Hg38 Start59764971
Hg38 End59764971
Junction SequenceATGGCGCGCTTTGAGGATCCAACACGGCGACCCTACAAGCTACCTGATCTGTGCACGGAACTGAACACTTCACTGCAAGACATAGAAATAACCTGTGTATATTGCAAGACAGTATTGGAACTTACAGAGG|GTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAA
Target Gene ▶
Target GeneVMP1
Nearby Gene-
Distance-
Virus Information ▶
Virus NameHuman Papillomavirus
Virus Subtype NameHPV18
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint1231
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect ▶
Gene IdENSG00000062716.14
Gene NameVMP1
TranscriptTranscript 1: ENST00000585847.6, Transcript 2: ENST00000891487.1, Transcript 3: ENST00000590850.2, Transcript 4: ENST00000591877.2, Transcript 5: ENST00000710770.1, Transcript 6: ENST00000589823.7, Transcript 7: ENST00000891492.1, Transcript 8: ENST00000891488.1, Transcript 9: ENST00000593168.6, Transcript 10: ENST00000891491.1, Transcript 11: ENST00000891489.1, Transcript 12: ENST00000586245.6, Transcript 13: ENST00000891494.1, Transcript 14: ENST00000891493.1, Transcript 15: ENST00000891490.1, Transcript 16: ENST00000587259.6, Transcript 17: ENST00000262291.9, Transcript 18: ENST00000938025.1, Transcript 19: ENST00000938026.1, Transcript 20: ENST00000938027.1, Transcript 21: ENST00000891495.1, Transcript 22: ENST00000587945.1, Transcript 23: ENST00000891496.1, Transcript 24: ENST00000958712.1, Transcript 25: ENST00000891498.1, Transcript 26: ENST00000891499.1, Transcript 27: ENST00000891497.1, Transcript 28: ENST00000891500.1, Transcript 29: ENST00000591315.6, Transcript 30: ENST00000958713.1, Transcript 31: ENST00000891501.1, Transcript 32: ENST00000592619.5
Transcript 1 Regionsplice_site
Transcript 1 Impactsplice_site_proximal
Transcript 2 Regionintron
Transcript 2 Impactintronic_insertion
Transcript 3 Regionsplice_site
Transcript 3 Impactsplice_site_proximal
Transcript 4 Regionsplice_site
Transcript 4 Impactsplice_site_proximal
Transcript 5 Regionsplice_site
Transcript 5 Impactsplice_site_proximal
Transcript 6 Regionintron
Transcript 6 Impactintronic_insertion
Transcript 7 Regionintron
Transcript 7 Impactintronic_insertion
Transcript 8 Regionsplice_site
Transcript 8 Impactsplice_site_proximal
Transcript 9 Regionsplice_site
Transcript 9 Impactsplice_site_proximal
Transcript 10 Regionsplice_site
Transcript 10 Impactsplice_site_proximal
Transcript 11 Regionsplice_site
Transcript 11 Impactsplice_site_proximal
Transcript 12 Regionsplice_site
Transcript 12 Impactsplice_site_proximal
Transcript 13 Regionintron
Transcript 13 Impactintronic_insertion
Transcript 14 Regionsplice_site
Transcript 14 Impactsplice_site_proximal
Transcript 15 Regionsplice_site
Transcript 15 Impactsplice_site_proximal
Transcript 16 Regionsplice_site
Transcript 16 Impactsplice_site_proximal
Transcript 17 Regionsplice_site
Transcript 17 Impactsplice_site_proximal
Transcript 18 Regionintron
Transcript 18 Impactintronic_insertion
Transcript 19 Regionintron
Transcript 19 Impactintronic_insertion
Transcript 20 Regionsplice_site
Transcript 20 Impactsplice_site_proximal
Transcript 21 Regionsplice_site
Transcript 21 Impactsplice_site_proximal
Transcript 22 Regionsplice_site
Transcript 22 Impactsplice_site_proximal
Transcript 23 Regionintron
Transcript 23 Impactintronic_insertion
Transcript 24 Regionsplice_site
Transcript 24 Impactsplice_site_proximal
Transcript 25 Regionintron
Transcript 25 Impactintronic_insertion
Transcript 26 Regionsplice_site
Transcript 26 Impactsplice_site_proximal
Transcript 27 Regionintron
Transcript 27 Impactintronic_insertion
Transcript 28 Regionsplice_site
Transcript 28 Impactsplice_site_proximal
Transcript 29 Regionsplice_site
Transcript 29 Impactsplice_site_proximal
Transcript 30 Regionsplice_site
Transcript 30 Impactsplice_site_proximal
Transcript 31 Regionsplice_site
Transcript 31 Impactsplice_site_proximal
Transcript 32 Regionintron
Transcript 32 Impactintronic_insertion
AlphaGenome Analysis
Chromosomechr17
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