Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20014910

Basic Information ▶
VISDB ID	TVIS20014910
Fusion Name	HPV-VMP1 integration
Validated	No
Curated Way	Curated
Method	RNA sequencing, followed by integration sites detection using ChimeraScan, deFuse and SOAPFuse
Wet Assay	Yes
Sample ID	RC92
Sample Name	ZJU
Sample Type	Tumor
Age	40
Gender	Female
Disease Information ▶
Disease Name	Cervical Cancer
Disease Abbreviation	CC
Cancer	Yes
Literature ▶
PubMed ID	33785400
Journal	Genomics
Published Year	2021
Human Genome ▶
Human Genome Version Description	GRCh37/hg19
Human Genome RefSeq Accession	GCF_000001405.13
Human Chromosome	chr17
Cytogenetic Band	q23.1
Human Strand
Human Integration Location Type	intronic
Hg19 Start	57866956
Hg19 End	57866956
Hg38 Start	59789595
Hg38 End	59789595
Junction Sequence	TGCAATTAGCTTAAGTAAAAACAAACTAAAATATGTGCCTAAAAGCAGTTTTATTACTTAGGGAGTGGATATAGTTATGCAAGCAATTGTTGTAGCGCACCTGGACAGGAAAATGACTAATACCAGGTGCGCCTTATATGCGCCAAAGAGGCGCGCCAATTGTTCAAAATATGTAGGAGCAGTGCCCAAAAGATTAAAGTTTGCAATAGTGCCAGCGTACTGTATTGTGCAGAAAACCACAGAC\|TCATAAGCAAAAACGAAGCGTAAGTAGTCTGTTGGTCCAAGTTTCAATACAGGGCCTTTTTTTTTTTGAGACTTGCTTTGTCACCCACGCTGGAGTGCAGTGGAGCGATTTTGGCTCACTGCAACCTCCGCCTTCCGGGTTCAAGCGATTCTCCTGCCTCAGTCTCCCGAGTAATTGGGACTACAGGTGCGAGCCACCACGCCGGGCTAATTTTTGTATTTTTA
Target Gene ▶
Target Gene	VMP1
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Human Papillomavirus
Virus Subtype Name	HPV18
Virus Genome Accession	-
TaxonomyID	10566
Virus Abbreviation	HPV
Virus Genome	-
Virus Genome Length	-
Virus Breakpoint1	7484
Virus Breakpoint2	-
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	-
ViMIC ID	-