Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20015348

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20015348
Fusion NameHPV-chr11:120495385 integration
ValidatedNo
Curated WayCurated
MethodRNA sequencing, followed by integration sites detection using ChimeraScan, deFuse and SOAPFuse
Wet AssayYes
Sample IDTCGA-JX-A5QV-01A-22R-A28H-07
Sample NameTCGA
Sample TypeTumor
Age37
GenderFemale
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33785400
JournalGenomics
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq23.3
Human Strand
Human Integration Location Typeintergenic
Hg19 Start120366094
Hg19 End120366094
Hg38 Start120495385
Hg38 End120495385
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneARHGEF12
Distance5448
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint13683
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-