Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20015993

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20015993
Fusion NameHPV-IGLV1-51 integration
ValidatedNo
Curated WayCurated
MethodRNA sequencing, followed by integration sites detection using ChimeraScan, deFuse and SOAPFuse
Wet AssayYes
Sample IDTCGA-BI-A20A-01A-11R-A14Y-07
Sample NameTCGA
Sample TypeTumor
Age49
GenderFemale
Disease Information
Disease NameCervical Cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID33785400
JournalGenomics
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr22
Cytogenetic Bandq11.22
Human Strand
Human Integration Location Typeexonic
Hg19 Start22677019
Hg19 End22677019
Hg38 Start22322663
Hg38 End22322663
Junction Sequence-
Target Gene
Target GeneIGLV1-51, ENSG00000286129
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV26
Virus Genome Accession-
TaxonomyID10566
Virus AbbreviationHPV
Virus Genome-
Virus Genome Length-
Virus Breakpoint13861
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-