| Basic Information ▶ | |
| VISDB ID | TVIS20016924 |
|---|---|
| Fusion Name | HPV-CLIP1 integration |
| Validated | No |
| Curated Way | Curated |
| Method | Tagmentation-assisted multiplex PCR enrichment sequencing (TaME-seq) protocol |
| Wet Assay | Yes |
| Sample ID | 2390 |
| Sample Name | CIN2 |
| Sample Type | Tumor |
| Age | 34 (2044) |
| Gender | Female |
| Disease Information ▶ | |
| Disease Name | Cervical cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 34175494 |
| Journal | Tumour Virus Research |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr12 |
| Cytogenetic Band | q24.31 |
| Human Strand | |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 122334319 |
| Hg38 End | 122334319 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | CLIP1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV18 |
| Virus Genome Accession | HPV18REF |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human Papillomavirus 18 (HPV18), complete genome |
| Virus Genome Length | 7857 bp |
| Virus Breakpoint1 | 1228 |
| Virus Breakpoint2 | - |
| Virus Gene Name | E1 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D