| Basic Information ▼ | |
| VISDB ID | TVIS20017304 |
|---|---|
| Fusion Name | HPV-chr5:2280609 integration |
| Validated | No |
| Curated Way | Curated |
| Method | High-throughput Viral Integration Detection method |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | 18O003863 |
| Sample Type | Tumor-derived tumor samples and cell lines |
| Age | - |
| Gender | Male |
| Disease Information ▼ | |
| Disease Name | Penile Squamous Cell Carcinoma |
| Disease Abbreviation | PSCC |
| Cancer | Yes |
| Literature ▼ | |
| PubMed ID | 34885212 |
| Journal | Cancers |
| Published Year | 2021 |
| Human Genome ▼ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr5 |
| Cytogenetic Band | p15.33 |
| Human Strand | - |
| Human Integration Location Type | intergenic |
| Hg19 Start | 2280723 |
| Hg19 End | 2280723 |
| Hg38 Start | 2280609 |
| Hg38 End | 2280609 |
| Junction Sequence | - |
| Target Gene ▼ | |
| Target Gene | - |
| Nearby Gene | ENSG00000299417 |
| Distance | 2112 |
| Virus Information ▼ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HpV16 |
| Virus Genome Accession | AF125673 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 16 isolate 16W12E, complete genome |
| Virus Genome Length | 7904 bp |
| Virus Breakpoint1 | 3574 |
| Virus Breakpoint2 | - |
| Virus Gene Name | HpV16gp4_E2;HpV16gp5_E4 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D