Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20018498

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20018498
Fusion NameHPV-MIR4300HG integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample Name18O003860
Sample TypeTumor-derived tumor samples and cell lines
Age-
GenderMale
Disease Information
Disease NamePenile Squamous Cell Carcinoma
Disease AbbreviationPSCC
CancerYes
Literature
PubMed ID34885212
JournalCancers
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq14.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start82276609
Hg19 End82276609
Hg38 Start82565567
Hg38 End82565567
Junction Sequence-
Target Gene
Target GeneMIR4300HG
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint14432
Virus Breakpoint2-
Virus Gene NameHpV16gp7_L2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-