| Basic Information ▶ | |
| VISDB ID | TVIS20018634 |
|---|---|
| Fusion Name | HPV-OBI1-AS1 integration |
| Validated | No |
| Curated Way | Curated |
| Method | High-throughput Viral Integration Detection method |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | 18O003860 |
| Sample Type | Tumor-derived tumor samples and cell lines |
| Age | - |
| Gender | Male |
| Disease Information ▶ | |
| Disease Name | Penile Squamous Cell Carcinoma |
| Disease Abbreviation | PSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 34885212 |
| Journal | Cancers |
| Published Year | 2021 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr13 |
| Cytogenetic Band | q22.3 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | 78724104 |
| Hg19 End | 78724104 |
| Hg38 Start | 78149969 |
| Hg38 End | 78149969 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | OBI1-AS1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HpV51 |
| Virus Genome Accession | M62877 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papilloma virus type 51 genomic DNA, partial sequence |
| Virus Genome Length | 7808 bp |
| Virus Breakpoint1 | 3940 |
| Virus Breakpoint2 | - |
| Virus Gene Name | HpV51gp7_L2;HpV51gp2_E2;HpV51gp3_E4//upstream;downstream |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D