Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20019059

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20019059
Fusion NameHPV-SCFD2 integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample Name18O003860
Sample TypeTumor-derived tumor samples and cell lines
Age-
GenderMale
Disease Information
Disease NamePenile Squamous Cell Carcinoma
Disease AbbreviationPSCC
CancerYes
Literature
PubMed ID34885212
JournalCancers
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq12
Human Strand+
Human Integration Location Typeintronic
Hg19 Start54158739
Hg19 End54158739
Hg38 Start53292572
Hg38 End53292572
Junction Sequence-
Target Gene
Target GeneSCFD2
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint13926
Virus Breakpoint2-
Virus Gene NameHpV16gp6_E5
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-