Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20019258

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20019258
Fusion NameHPV-DGKB integration
ValidatedNo
Curated WayCurated
MethodHigh-throughput Viral Integration Detection method
Wet AssayYes
Sample ID-
Sample Name18O003864
Sample TypeTumor-derived tumor samples and cell lines
Age-
GenderMale
Disease Information
Disease NamePenile Squamous Cell Carcinoma
Disease AbbreviationPSCC
CancerYes
Literature
PubMed ID34885212
JournalCancers
Published Year2021
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandp21.2
Human Strand-
Human Integration Location Typeintronic
Hg19 Start14194829
Hg19 End14194829
Hg38 Start14155204
Hg38 End14155204
Junction Sequence-
Target Gene
Target GeneDGKB
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHpV16
Virus Genome AccessionAF534061
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 East Asian type, complete genome
Virus Genome Length7905 bp
Virus Breakpoint11229
Virus Breakpoint2-
Virus Gene NameHpV16gp3_E1
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-