| Basic Information ▶ | |
| VISDB ID | TVIS20020070 |
|---|---|
| Fusion Name | HPV-RTL1 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | GS18107 |
| Sample Type | Tumor-derived tumor samples and cell lines |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Oropharyngeal Squamous Cell Carcinoma |
| Disease Abbreviation | OPSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 34903527 |
| Journal | Genome Research |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr14 |
| Cytogenetic Band | q32.2 |
| Human Strand | - |
| Human Integration Location Type | intronic |
| Hg19 Start | 101355673 |
| Hg19 End | 101355674 |
| Hg38 Start | 100889336 |
| Hg38 End | 100889337 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | RTL1, MIR493HG, MEG8 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV69 |
| Virus Genome Accession | AB027020.1 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 69 DNA, complete genome |
| Virus Genome Length | 7700 bp |
| Virus Breakpoint1 | 2802 |
| Virus Breakpoint2 | 2803 |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D