Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20020520

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20020520
Fusion NameHPV-ENSG00000305042 integration
ValidatedYes
Curated WayCurated
MethodHPV double capture and next-generation sequencing
Wet AssayYes
Sample ID-
Sample NameR314
Sample TypeTumor
Age<65 (45); >65 (35)
Gender-
Disease Information
Disease NameHead and Neck squamous cell carcinoma
Disease AbbreviationHNSCC
CancerYes
Literature
PubMed ID35398964
JournalMolecular Oncology
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq31.1
Human Strand
Human Integration Location Typeexonic
Hg19 Start176909119
Hg19 End177773847
Hg38 Start176044391
Hg38 End176909119
Junction Sequence-
Target Gene
Target GeneENSG00000305042, ENSG00000309788, HOXD12, HOXD11, HOXD9, ENSG00000298646, HOXD8, MIR10B, HOXD4, ENSG00000272729, ENSG00000309756, HAGLROS, HOXD1, MIR7704, ENSG00000279160, ENSG00000218175, PPIAP67, NRAL, ENSG00000236231, ENSG00000306156, MIR1246, RNU6ATAC14P, FUCA1P1, RPL29P8, ENSG00000279205, ENSG00000306121, EVX2, HOXD13, HOXD10, HOXD-AS2, HAGLR, RPSAP25, ENSG00000307547, ENSG00000306098, ENSG00000306034, LINC01116, ENSG00000227098, MTX2, LINC01117, ENSG00000230552, ENSG00000303534, HOXD3
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionNC_028125
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 163 isolate KC3, complete genome
Virus Genome Length7233 bp
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-