Basic Information ▼ | |
VISDB ID | TVIS20020520 |
---|---|
Fusion Name | HPV-ENSG00000305042 integration |
Validated | Yes |
Curated Way | Curated |
Method | HPV double capture and next-generation sequencing |
Wet Assay | Yes |
Sample ID | - |
Sample Name | R314 |
Sample Type | Tumor |
Age | <65 (45); >65 (35) |
Gender | - |
Disease Information ▼ | |
Disease Name | Head and Neck squamous cell carcinoma |
Disease Abbreviation | HNSCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 35398964 |
Journal | Molecular Oncology |
Published Year | 2022 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr2 |
Cytogenetic Band | q31.1 |
Human Strand | |
Human Integration Location Type | exonic |
Hg19 Start | 176909119 |
Hg19 End | 177773847 |
Hg38 Start | 176044391 |
Hg38 End | 176909119 |
Junction Sequence | - |
Target Gene ▼ | |
Target Gene | ENSG00000305042, ENSG00000309788, HOXD12, HOXD11, HOXD9, ENSG00000298646, HOXD8, MIR10B, HOXD4, ENSG00000272729, ENSG00000309756, HAGLROS, HOXD1, MIR7704, ENSG00000279160, ENSG00000218175, PPIAP67, NRAL, ENSG00000236231, ENSG00000306156, MIR1246, RNU6ATAC14P, FUCA1P1, RPL29P8, ENSG00000279205, ENSG00000306121, EVX2, HOXD13, HOXD10, HOXD-AS2, HAGLR, RPSAP25, ENSG00000307547, ENSG00000306098, ENSG00000306034, LINC01116, ENSG00000227098, MTX2, LINC01117, ENSG00000230552, ENSG00000303534, HOXD3 |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Human Papillomavirus |
Virus Subtype Name | HPV16 |
Virus Genome Accession | NC_028125 |
TaxonomyID | 10566 |
Virus Abbreviation | HPV |
Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
Virus Genome Length | 7233 bp |
Virus Breakpoint1 | - |
Virus Breakpoint2 | - |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | - |
ViMIC ID | - |