| Basic Information ▶ | |
| VISDB ID | TVIS20020521 |
|---|---|
| Fusion Name | HPV-NRAL integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R314 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr2 |
| Cytogenetic Band | q31.1,q31.2 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 177338880 |
| Hg19 End | 178203608 |
| Hg38 Start | 176474152 |
| Hg38 End | 177338880 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | NRAL, ENSG00000236231, ENSG00000306156, MIR1246, RNU6ATAC14P, FUCA1P1, RPL29P8, ENSG00000279205, ENSG00000306121, RNU6-187P, ENSG00000308133, RNA5SP112, STUB1P1, Y_RNA, KRT8P40, MIR4444-1, DNAJC19P5, MIR3128, ENSG00000222043, ENSG00000271825, MIR6512, ENSG00000306098, ENSG00000306034, LINC01116, ENSG00000227098, ENSG00000308115, HNRNPA3, ENSG00000271996, LINC01117, ENSG00000230552, ENSG00000303534, NFE2L2, ENSG00000213963, ENSG00000229337 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D