| Basic Information ▶ | |
| VISDB ID | TVIS20020522 |
|---|---|
| Fusion Name | HPV-RNU1-17P integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R314 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr5 |
| Cytogenetic Band | q35.3 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 180127324 |
| Hg19 End | 180700324 |
| Hg38 Start | 180700324 |
| Hg38 End | 181273323 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | RNU1-17P, OR2Y1, ENSG00000296385, ENSG00000280161, ENSG00000297867, LINC00847, ENSG00000286128, ZFP62, ENSG00000297921, ENSG00000294604, Y_RNA, RPS29P12, ENSG00000249287, TMEM69P2, ARPP19P1, RNU6-1036P, ENSG00000299859, MIR8089, ENSG00000241870, ENSG00000310358, ENSG00000298425, FOXO1B, ENSG00000248560, ENSG00000308702, TRIM7-AS2, TRIM7, TRIM7-AS1, ENSG00000248514, ENSG00000286644, MIR4638, ENSG00000247049, SNORD96A, SNORD95, ENSG00000295323, MGAT1, HEIH, BTNL8, BTNL3, BTNL9, OR2V1, OR2V2, LINC01962, TRIM41, ENSG00000304351, RACK1, TRIM52, ENSG00000299843, TRIM52-AS1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D