| Basic Information ▶ | |
| VISDB ID | TVIS20020538 |
|---|---|
| Fusion Name | HPV-ENSG00000274837 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R320 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chrY |
| Cytogenetic Band | q11.223 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 21877658 |
| Hg19 End | 24023805 |
| Hg38 Start | 19715772 |
| Hg38 End | 21877658 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ENSG00000274837, RCC2P2, ZNF885P, KDM5DP1, HSFY4P, ENSG00000216844, GAPDHP17, TMEM167AP1, ENSG00000254488, TOMM22P1, NEFLP1, PRORY, ENSG00000236615, RBMY2TP, TSPY14P, ENSG00000242393, ENSG00000228257, ELOCP5, CDY10P, USP9YP3, USP9YP8, CDY11P, OFD1P16Y, KDM5D, ENSG00000288049, ENSG00000300595, ZNF886P, TTTY10, ENSG00000286247, TBL1YP1, RPS4Y2, ENSG00000297760, ENSG00000226918, ENSG00000293672, ENSG00000290954, RBMY2EP, ENSG00000288057, RBMY1B, RBMY1A1, TTTY13, ENSG00000286187, ENSG00000229725, EIF1AY, ENSG00000289707, RBMY1HP |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D