| Basic Information ▶ | |
| VISDB ID | TVIS20020546 |
|---|---|
| Fusion Name | HPV-ENSG00000295719 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R550 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr17 |
| Cytogenetic Band | q12 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 35202656 |
| Hg19 End | 36845391 |
| Hg38 Start | 36845391 |
| Hg38 End | 38689138 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ENSG00000295719, ENSG00000302807, LHX1, ENSG00000276707, ENSG00000277911, ENSG00000277589, MIR2909, ENSG00000277579, ENSG00000278638, ENSG00000274308, HMGB1P24, ENSG00000293218, ENSG00000276810, ENSG00000276054, ENSG00000273965, ENSG00000275839, ENSG00000289110, ENSG00000298213, ENSG00000298194, MIR378J, ENSG00000302846, ENSG00000306576, YWHAEP7, RNU6-489P, ENSG00000297452, 5S_rRNA, ENSG00000301161, ENSG00000296826, TBC1D3L, ENSG00000309625, ENSG00000297953, Y_RNA, ENSG00000302878, TBC1D3E, RNA5SP526, ENSG00000296427, ENSG00000296410, Y_RNA, ENSG00000306455, ENSG00000305566, ENSG00000298497, ENSG00000274996, ENSG00000296690, EPOP, LHX1-DT, C17orf78, TADA2A, DUSP14, SYNRG, ENSG00000274244, HNF1B, ENSG00000306146, ENSG00000275173, TBC1D3K, ENSG00000297931, TBC1D3C, ENSG00000304197, NPEPPSP1, NPEPPSP1, TBC1D3, NPEPPSP1, ENSG00000296484, MRPL45, GPR179, ARHGAP23, ENSG00000276170, ENSG00000275532, AATF, ACACA, ENSG00000298167, ENSG00000277688, DDX52, YWHAEP7, TBC1D3D, SOCS7, SRCIN1, ENSG00000307699 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D