| Basic Information ▶ | |
| VISDB ID | TVIS20020549 |
|---|---|
| Fusion Name | HPV-SMCO4P1 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R550 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr17 |
| Cytogenetic Band | q21.31 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 42708985 |
| Hg19 End | 44631617 |
| Hg38 Start | 44631617 |
| Hg38 End | 46554251 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | SMCO4P1, ENSG00000267160, ENSG00000279879, RN7SL819P, RPL6P26, ENSG00000307712, HIGD1B, RN7SL405P, CCDC103, FAM187A, ENSG00000295646, MIR6783, KIF18B-DT, C1QL1, ENSG00000289024, ENSG00000267788, Y_RNA, MIR6784, ENSG00000276728, ENSG00000309064, HEXIM1, HEXIM2, FMNL1-AS1, ENSG00000293499, EFCAB15P, SPATA32, RNA5SP443, ENSG00000303778, ENSG00000267344, ENSG00000294490, ENSG00000236234, MIR4315-1, Metazoa_SRP, ENSG00000266918, RDM1P1, ENSG00000304996, ENSG00000285668, DND1P1, ENSG00000280022, MAPK8IP1P2, ENSG00000295828, RPS26P8, LINC02210, ENSG00000265547, SPPL2C, ENSG00000303280, ENSG00000303296, MAPT-IT1, Metazoa_SRP, STH, ENSG00000262372, KANSL1-AS1, Y_RNA, MAPK8IP1P1, ENSG00000305169, ENSG00000262539, ENSG00000291018, RN7SL656P, RDM1P2, RN7SL199P, LINC01180, MEIOC, CCDC43, DBF4B, ENSG00000307700, ADAM11, ENSG00000267405, ENSG00000267505, EFTUD2, GFAP, KIF18B, ENSG00000294432, DCAKD, PLCD3, ACBD4, HEXIM2-AS1, ENSG00000267288, FMNL1, MAP3K14-AS1, MAP3K14, ENSG00000267446, ARHGAP27, ENSG00000267198, ENSG00000291175, LRRC37A4P, LINC02210, ENSG00000306349, CRHR1, ENSG00000262881, ENSG00000305150, ARL17B, ENSG00000289729, LRRC37A, GJC1, FMNL1-DT, ENSG00000301815, PLEKHM1, LINC02210-CRHR1, MAPT-AS1, MAPT, ENSG00000305133, ENSG00000261575, ENSG00000294196, NSFP1, ARL17A, LRRC37A2, NMT1, KANSL1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D