| Basic Information ▶ | |
| VISDB ID | TVIS20020605 |
|---|---|
| Fusion Name | HPV-Y_RNA integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R619 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr8 |
| Cytogenetic Band | q22.2 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 100458711 |
| Hg19 End | 101470939 |
| Hg38 Start | 99446483 |
| Hg38 End | 100458711 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | Y_RNA, MIR599, MIR875, RN7SL350P, ENSG00000253539, ENSG00000253912, ENSG00000287952, SNORD77B, ENSG00000221753, ENSG00000301454, POLR2K, Y_RNA, UFM1P3, Y_RNA, MIR4471, ENSG00000235683, SPAG1, ENSG00000302563, ENSG00000253217, ENSG00000253666, COX6C, RGS22, FBXO43, RNF19A, ENSG00000253824, VPS13B |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D