| Basic Information ▶ | |
| VISDB ID | TVIS20020662 |
|---|---|
| Fusion Name | HPV-RN7SL526P integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R647 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr19 |
| Cytogenetic Band | q13.43 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 58574895 |
| Hg19 End | 59086262 |
| Hg38 Start | 58063527 |
| Hg38 End | 58574895 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | RN7SL526P, ENSG00000295636, ENSG00000297634, ENSG00000268293, ENSG00000269236, ENSG00000300598, RPS15AP36, ENSG00000268866, ENSG00000268201, ENSG00000269794, MIR6806, A1BG, A1BG-AS1, ENSG00000279611, ENSG00000268049, ZNF497-AS1, RNA5SP473, ENSG00000294824, MIR4754, ENSG00000294853, ENSG00000294800, RNF225, LINC02560, ZNF584-DT, ENSG00000268543, ENSG00000268912, ZNF132, ZNF324B, ENSG00000269106, RNU6-1337P, ENSG00000273901, ENSG00000307855, ENSG00000305010, RN7SL525P, TRIM28, MIR6807, CHMP2A, ZSCAN18, ZNF329, ENSG00000286632, ENSG00000298382, ZNF544, ENSG00000283515, ZNF8-DT, ZNF8, ZNF8-ERVK3-1, ERVK3-1, ENSG00000268230, ZNF497, ZNF837, RPS5, ZNF584, ZNF132-DT, ZNF324, ZNF446, SLC27A5, RN7SL693P, ZBTB45, UBE2M, MZF1, ZNF135, ZNF274, ENSG00000283103, ZSCAN22, MZF1-AS1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D