| Basic Information ▶ | |
| VISDB ID | TVIS20020664 |
|---|---|
| Fusion Name | HPV-ARL2BPP7 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R648 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr9 |
| Cytogenetic Band | q31.1 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 104776064 |
| Hg19 End | 107538345 |
| Hg38 Start | 102013782 |
| Hg38 End | 104776064 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ARL2BPP7, RNU6-329P, ENSG00000286243, ENSG00000295687, CCSER2P1, ZYG11AP1, ENSG00000300529, ENSG00000234269, ENSG00000229830, RNA5SP291, TOPORSLP, ENSG00000203396, OR13F1, OR13C4, OR13C3, OR13C8, OR13D2P, OR13C5, OR13C2, OR13C9, OR13I1P, ENSG00000290765, OR13C1P, OR13D1, OR13D3P, ENSG00000298247, ENSG00000307118, CYLC2, ENSG00000307505, ENSG00000299778, SMC2, ENSG00000293400, ENSG00000283001, ENSG00000297101, NIPSNAP3A, NIPSNAP3B, ENSG00000296202, ENSG00000289079, LINC00587, LINC01492, ENSG00000226566, SMC2-DT, LINC03094, ENSG00000297079, ENSG00000297139 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D