| Basic Information ▶ | |
| VISDB ID | TVIS20020676 |
|---|---|
| Fusion Name | HPV-HSFY1P1 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R653 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr22 |
| Cytogenetic Band | q11.1 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 17279652 |
| Hg19 End | 17760542 |
| Hg38 Start | 16798762 |
| Hg38 End | 17279652 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | HSFY1P1, HSFY1P1, GPM6BP3, ENSG00000283535, ENSG00000237835, ENSG00000237689, MTND1P17, ENSG00000237358, ENSG00000298208, ENSG00000297273, ENSG00000225480, IGKV1OR22-5, IGKV2OR22-4, IGKV2OR22-3, IGKV3OR22-2, IGKV1OR22-1, ENSG00000285045, IL9RP6, ENSG00000310179, VN1R9P, ENSG00000295360, CECR7, ENSG00000273442, RPL31P62, HDHD5-AS1, RPL32P5, FAM32BP, CECR3, XKR3, ZNF402P, GAB4, ENSG00000295065, IL17RA, TMEM121B, LINC01664, HDHD5, ADA2, ENSG00000296914, ENSG00000290931, ENSG00000308779 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D