| Basic Information ▶ | |
| VISDB ID | TVIS20020709 |
|---|---|
| Fusion Name | HPV-ENSG00000289227 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R633 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr9 |
| Cytogenetic Band | q31.1,q31.2 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 108142752 |
| Hg19 End | 110905032 |
| Hg38 Start | 105380471 |
| Hg38 End | 108142752 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ENSG00000289227, RALGAPA1P1, ENSG00000279609, TAL2, ENSG00000228366, SLC25A6P5, ENSG00000225002, ENSG00000302742, ENSG00000229297, MIR8081, ENSG00000237062, RN7SKP77, ENSG00000228143, ENSG00000309269, RNA5SP292, ENSG00000302724, ENSG00000302701, RPL7AP44, ENSG00000306039, ENSG00000223615, ENSG00000225531, ENSG00000226535, ENSG00000287233, HMGN2P32, RNU6-492P, KLF4, ENSG00000289987, ENSG00000308462, ENSG00000236005, PPIAP88, RNU6-996P, ENSG00000304985, ENSG00000294077, ENSG00000301201, ENSG00000295650, RNU6-1064P, ENSG00000302194, RN7SL659P, RPL36AP6, ENSG00000233727, RNA5SP293, RPS15AP27, RPL31P43, ENSG00000303981, CHCHD4P2, FKTN-AS1, DEPDC1P2, ENSG00000310433, ENSG00000303675, ENSG00000303685, ENSG00000302772, ENSG00000226047, ENSG00000305014, RAD23B, ENSG00000299203, LINC01509, ENSG00000308445, ENSG00000300342, ENSG00000299632, ENSG00000301055, ENSG00000299606, ENSG00000303967, SLC44A1, FSD1L, FKTN, TMEM38B, LINC01505, ENSG00000299785, ENSG00000230782, ENSG00000304997, ENSG00000309014, ENSG00000301188, ZNF462, ENSG00000303954 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV26 |
| Virus Genome Accession | - |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | - |
| Virus Genome Length | - |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D