| Basic Information ▶ | |
| VISDB ID | TVIS20020914 |
|---|---|
| Fusion Name | HPV-RPA3 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV capture sequencing |
| Wet Assay | Yes |
| Sample ID | Caski.42 |
| Sample Name | New sample |
| Sample Type | Caski cell line |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35968887 |
| Journal | Clinical and Translational Medicine |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr7 |
| Cytogenetic Band | p21.3 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 7641295 |
| Hg38 End | 7641295 |
| Junction Sequence | aagaccccctttaacagtagatcctgtgggcccttctgatccttctATAGTTTCTTTAGTGGAAGAAACTAGTTTTATTGATGCTGGTGCACTTAAGGATGGGTAACGGGAAAGAACCACTGGCCAGTACTAGGGGAGACAAGCTTAAATCGTTGTTAGACCCCGAGCTAGGGTTCCCCGAGCTAGGGTTCTCCCTtctga |
| Target Gene ▶ | |
| Target Gene | RPA3, UMAD1, ENSG00000283549 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | K02718 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 16 (HPV16), complete genome |
| Virus Genome Length | 7,904 bp |
| Virus Breakpoint1 | 4594 |
| Virus Breakpoint2 | - |
| Virus Gene Name | L2 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D