Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20022376

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20022376
Fusion NameHPV-ZFAND3 integration
ValidatedNo
Curated WayCurated
MethodHPV capture sequencing
Wet AssayYes
Sample IDD249736.6
Sample NameNew sample
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID35968887
JournalClinical and Translational Medicine
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr6
Cytogenetic Bandp21.2
Human Strand+
Human Integration Location Typeintronic
Hg19 Start-
Hg19 End-
Hg38 Start38070157
Hg38 End38070157
Junction SequenceaccatcaatcaccaccacccaattcCTACTTTTTACAGAAATAACCGCTGTTTATTCATTATGGGTTGTATTTTTTCTATGCAGCTGTGTACATGTTTACATACAAGATTTTATCTTGGCTGGGTGCTGTGGTATTGCAGCCTCCAACACCTGCAGAAACTGGAGGGCATTTTACactttcatcatccactattagtacacataattatgaagaaattcctatggatacatttattgttagcacaaacccta
Target Gene
Target GeneZFAND3
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV16
Virus Genome AccessionK02718
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus type 16 (HPV16), complete genome
Virus Genome Length7,904 bp
Virus Breakpoint14736
Virus Breakpoint2-
Virus Gene NameL2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-