Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS20022489

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS20022489
Fusion NameHPV-TMEM229B integration
ValidatedNo
Curated WayCurated
MethodHPV capture sequencing
Wet AssayYes
Sample IDG151224R03801.1
Sample NameNew sample
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameCervical cancer
Disease AbbreviationCC
CancerYes
Literature
PubMed ID35968887
JournalClinical and Translational Medicine
Published Year2022
Human Genome
Human Genome Version DescriptionGRCh38/hg38
Human Genome RefSeq AccessionGCF_000001405.40
Human Chromosomechr14
Cytogenetic Bandq24.1
Human Strand+
Human Integration Location Typeintronic
Hg19 Start-
Hg19 End-
Hg38 Start67528937
Hg38 End67528937
Junction SequenceACCTGTAGTTATTGAACCTGTTGGTCCTTCTGAGCCATCTATTGTGCAATTGGTGGAGGACTCAAGTGTTATAACCTCTGGACCACCAGTACCAACATTTACAGGCACCTCTGGATTTGGAATCACTGCCCACCTCCTCATTGGAATCCTT
Target Gene
Target GeneTMEM229B
Nearby Gene-
Distance-
Virus Information
Virus NameHuman Papillomavirus
Virus Subtype NameHPV39
Virus Genome AccessionM62849
TaxonomyID10566
Virus AbbreviationHPV
Virus GenomeHuman papillomavirus ORFs
Virus Genome Length7,833 bp
Virus Breakpoint14634
Virus Breakpoint2-
Virus Gene NameL2
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-