| Basic Information ▶ | |
| VISDB ID | TVIS20022854 |
|---|---|
| Fusion Name | HPV-ASAP1 integration |
| Validated | No |
| Curated Way | Curated |
| Method | HPV capture sequencing |
| Wet Assay | Yes |
| Sample ID | G151224R28401.7 |
| Sample Name | New sample |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Cervical cancer |
| Disease Abbreviation | CC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35968887 |
| Journal | Clinical and Translational Medicine |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh38/hg38 |
| Human Genome RefSeq Accession | GCF_000001405.40 |
| Human Chromosome | chr8 |
| Cytogenetic Band | q24.21 |
| Human Strand | + |
| Human Integration Location Type | intronic |
| Hg19 Start | - |
| Hg19 End | - |
| Hg38 Start | 130077491 |
| Hg38 End | 130077491 |
| Junction Sequence | CACTGCCATTGCTATCCCCATTTCCAGTATTCTCCACGGTTACCTGAGTCTCGAGCATTTCTGTCCCCTGATGTCCTAAGAGTTGGTTGCTGCTGCTGCTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTnGTGCACAGcTGGATtGGG |
| Target Gene ▶ | |
| Target Gene | ASAP1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV59 |
| Virus Genome Accession | X77858 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papilloma virus type 59, complete viral genome |
| Virus Genome Length | 7,896 b |
| Virus Breakpoint1 | 1289 |
| Virus Breakpoint2 | - |
| Virus Gene Name | E1 |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000153317.16 |
| Gene Name | ASAP1 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000524124.5, Transcript 2: ENST00000913391.1, Transcript 3: ENST00000518721.6, Transcript 4: ENST00000357668.2, Transcript 5: ENST00000871692.1, Transcript 6: ENST00000871693.1, Transcript 7: ENST00000521075.5, Transcript 8: ENST00000962395.1, Transcript 9: ENST00000519483.5, Transcript 10: ENST00000520189.1 |
| SpliceAI Score | |
| Delta Scores | Acceptor Gain: 0.030 | Acceptor Loss: 0.020 | Donor Gain: 0.050 | Donor Loss: 0.020 |
| Delta Score Max | 0.050 |
| Delta Position at Max | 0 |
| Delta Score Flag | LOW |
| Gene | ASAP1 |
| AlphaGenome Analysis | |
| Chromosome | chr8 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D